MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6035_ses-1_T1w.
  • Date and time: 2023-08-10, 19:45.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.5218612286530911
cnr2.457756596341011
efc0.5993591822859815
fber2935.8157288501125
fwhmavg2.899226666666667
fwhmx2.88168
fwhmy3.0217
fwhmz2.7943
icvscsf0.15908576261458654
icvsgm0.45348065817985206
icvswm0.38743357920556143
inumed1.381074070930481
inurange0.4168536186218261
qi10.005206409279868127
qi20.0008961481639733657
rpvecsf34.45195689984049
rpvegm12.865652876728731
rpvewm17.462566478007368
sizex176
sizey256
sizez256
snrcsf2.1197064677497
snrgm6.863559437882703
snrtotal8.653401382463926
snrwm16.976938241759374
snrdcsf155.9318562691146
snrdgm71.33438892724035
snrdtotal110.13873122737347
snrdwm103.14994848576545
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk286.2881890962936
summarybgmad6.3513009427891935
summarybgmean13.227435469461867
summarybgmedian8.631713390350342
summarybgn1732179.0
summarybgp050.0
summarybgp9521.930945873260498
summarybgstdv46.12915271522047
summarycsfk-1.1463729546266757
summarycsfmad700.2546278266235
summarycsfmean1313.7580796758245
summarycsfmedian1511.7007384300232
summarycsfn13097.0
summarycsfp05171.26598138809206
summarycsfp952294.8976544380184
summarycsfstdv713.1379031056331
summarygmk-0.3088129298738118
summarygmmad105.8866142253064
summarygmmean697.8483437994637
summarygmmedian691.5600891113281
summarygmn29856.0
summarygmp05541.5441073179245
summarygmp95869.2455077171326
summarygmstdv100.75654092893629
summarywmk0.5140865773103442
summarywmmad55.07620668299286
summarywmmean999.7291348400097
summarywmmedian999.9999809265137
summarywmn190304.0
summarywmp05902.3017730712891
summarywmp951096.2276005744934
summarywmstdv58.90328039765151
tpmoverlapcsf0.12322498857975006
tpmoverlapgm0.3943983018398285
tpmoverlapwm0.47487497329711914
wm2max0.3414996288047513
AcquisitionDuration318.42
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime15:52:42.522500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[0.0162309, 0.999868, 3.69975e-08, -0.0245389, 0.000398377, -0.999699]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.262
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2624, 5330, -7453, -80, 112, -593, 179, -266]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp288.527
md5sum871ea5b713509b6edd2e3b264a225358
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.